WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W09D6.6.1 Sequence Name  W09D6.6.1
Length (nt)  2583   Chromosome Location  III: 11091548-11099964
Chromosome . Primary Identifier  III Chromosome Location . Start  11091548
Chromosome Location . End  11099964 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W09D6.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001815 hmt-1 W09D6.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W09D6.6 W09D6.6 2406   III: 11091712-11091817

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W09D6.6.1 11091548 11099964 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105029   270   III: 11091548-11091817 Caenorhabditis elegans
Exon105030   557   III: 11092621-11093177 Caenorhabditis elegans
Exon105031   208   III: 11093878-11094085 Caenorhabditis elegans
Exon105032   213   III: 11094442-11094654 Caenorhabditis elegans
Exon105033   169   III: 11094818-11094986 Caenorhabditis elegans
Exon105035   122   III: 11095593-11095714 Caenorhabditis elegans
Exon105036   277   III: 11095999-11096275 Caenorhabditis elegans
Exon105037   157   III: 11096326-11096482 Caenorhabditis elegans
Exon105038   264   III: 11097660-11097923 Caenorhabditis elegans
Exon105039   158   III: 11098636-11098793 Caenorhabditis elegans
Exon105040   103   III: 11099028-11099130 Caenorhabditis elegans
Exon105041   85   III: 11099880-11099964 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W09D6.6.1 11091548 11099964 -1

1 Sequence

Length
2583

1 Sequence Ontology Term

Identifier Name Description
transcript