WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3A.6a.1 Sequence Name  Y47D3A.6a.1
Length (nt)  4673   Chromosome Location  III: 11170890-11195201
Chromosome . Primary Identifier  III Chromosome Location . Start  11170890
Chromosome Location . End  11195201 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006604 tra-1 Y47D3A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3A.6a Y47D3A.6a 3333   III: 11172092-11172244

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.6a.1 11170890 11195201 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105106   1355   III: 11170890-11172244 Caenorhabditis elegans
Exon105107   149   III: 11172599-11172747 Caenorhabditis elegans
Exon105108   187   III: 11172976-11173162 Caenorhabditis elegans
Exon105109   317   III: 11173548-11173864 Caenorhabditis elegans
Exon105110   402   III: 11174788-11175189 Caenorhabditis elegans
Exon105111   66   III: 11175267-11175332 Caenorhabditis elegans
Exon105112   736   III: 11175465-11176200 Caenorhabditis elegans
Exon105113   63   III: 11177804-11177866 Caenorhabditis elegans
Exon105114   258   III: 11179084-11179341 Caenorhabditis elegans
Exon105115   165   III: 11181097-11181261 Caenorhabditis elegans
Exon105117   168   III: 11182330-11182497 Caenorhabditis elegans
Exon105118   109   III: 11182978-11183086 Caenorhabditis elegans
Exon105120   44   III: 11183148-11183191 Caenorhabditis elegans
Exon105122   221   III: 11183714-11183934 Caenorhabditis elegans
Exon105124   117   III: 11191815-11191931 Caenorhabditis elegans
Exon105126   61   III: 11193042-11193102 Caenorhabditis elegans
Exon105128   96   III: 11194865-11194960 Caenorhabditis elegans
Exon105130   159   III: 11195043-11195201 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.6a.1 11170890 11195201 -1

1 Sequence

Length
4673

1 Sequence Ontology Term

Identifier Name Description
transcript