WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3A.23a.1 Sequence Name  Y47D3A.23a.1
Length (nt)  2499   Chromosome Location  III: 11278996-11286119
Chromosome . Primary Identifier  III Chromosome Location . Start  11278996
Chromosome Location . End  11286119 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.23a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012934 gly-9 Y47D3A.23 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3A.23a Y47D3A.23a 1740   III: 11279754-11279894

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.23a.1 11278996 11286119 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105368   899   III: 11278996-11279894 Caenorhabditis elegans
Exon105370   126   III: 11280456-11280581 Caenorhabditis elegans
Exon105372   114   III: 11280819-11280932 Caenorhabditis elegans
Exon105374   242   III: 11281812-11282053 Caenorhabditis elegans
Exon105376   88   III: 11282896-11282983 Caenorhabditis elegans
Exon105378   203   III: 11283423-11283625 Caenorhabditis elegans
Exon105380   291   III: 11284248-11284538 Caenorhabditis elegans
Exon105382   402   III: 11285534-11285935 Caenorhabditis elegans
Exon105383   134   III: 11285986-11286119 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.23a.1 11278996 11286119 -1

1 Sequence

Length
2499

1 Sequence Ontology Term

Identifier Name Description
transcript