WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3A.28.1 Sequence Name  Y47D3A.28.1
Length (nt)  2178   Chromosome Location  III: 11317570-11326664
Chromosome . Primary Identifier  III Chromosome Location . Start  11317570
Chromosome Location . End  11326664 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.28.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012935 mcm-10 Y47D3A.28 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3A.28 Y47D3A.28 2076   III: 11317570-11317772

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.28.1 11317570 11326664 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105388   203   III: 11317570-11317772 Caenorhabditis elegans
Exon105389   97   III: 11317835-11317931 Caenorhabditis elegans
Exon105390   282   III: 11318071-11318352 Caenorhabditis elegans
Exon105392   69   III: 11319399-11319467 Caenorhabditis elegans
Exon105393   67   III: 11319515-11319581 Caenorhabditis elegans
Exon105394   83   III: 11319691-11319773 Caenorhabditis elegans
Exon105395   112   III: 11320211-11320322 Caenorhabditis elegans
Exon105396   121   III: 11321981-11322101 Caenorhabditis elegans
Exon105397   136   III: 11322357-11322492 Caenorhabditis elegans
Exon105398   321   III: 11323028-11323348 Caenorhabditis elegans
Exon105399   204   III: 11324190-11324393 Caenorhabditis elegans
Exon105400   117   III: 11324695-11324811 Caenorhabditis elegans
Exon105401   150   III: 11325646-11325795 Caenorhabditis elegans
Exon105402   216   III: 11326449-11326664 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.28.1 11317570 11326664 1

1 Sequence

Length
2178

1 Sequence Ontology Term

Identifier Name Description
transcript