WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3A.26a.1 Sequence Name  Y47D3A.26a.1
Length (nt)  4003   Chromosome Location  III: 11290904-11306247
Chromosome . Primary Identifier  III Chromosome Location . Start  11290904
Chromosome Location . End  11306247 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.26a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004873 smc-3 Y47D3A.26 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3A.26a Y47D3A.26a 3618   III: 11290942-11290956

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.26a.1 11290904 11306247 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105397   53   III: 11290904-11290956 Caenorhabditis elegans
Exon105398   115   III: 11291000-11291114 Caenorhabditis elegans
Exon105399   233   III: 11291164-11291396 Caenorhabditis elegans
Exon105400   187   III: 11291449-11291635 Caenorhabditis elegans
Exon105401   406   III: 11292671-11293076 Caenorhabditis elegans
Exon105402   103   III: 11294239-11294341 Caenorhabditis elegans
Exon105403   249   III: 11295481-11295729 Caenorhabditis elegans
Exon105404   104   III: 11296411-11296514 Caenorhabditis elegans
Exon105405   100   III: 11296573-11296672 Caenorhabditis elegans
Exon105406   200   III: 11297444-11297643 Caenorhabditis elegans
Exon105407   115   III: 11297929-11298043 Caenorhabditis elegans
Exon105408   588   III: 11298760-11299347 Caenorhabditis elegans
Exon105409   132   III: 11300133-11300264 Caenorhabditis elegans
Exon105410   291   III: 11300710-11301000 Caenorhabditis elegans
Exon105412   210   III: 11302716-11302925 Caenorhabditis elegans
Exon105414   115   III: 11303375-11303489 Caenorhabditis elegans
Exon105416   197   III: 11304649-11304845 Caenorhabditis elegans
Exon105418   79   III: 11305235-11305313 Caenorhabditis elegans
Exon105421   526   III: 11305722-11306247 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.26a.1 11290904 11306247 1

1 Sequence

Length
4003

1 Sequence Ontology Term

Identifier Name Description
transcript