WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28D6.5g.1 Sequence Name  T28D6.5g.1
Length (nt)  2925   Chromosome Location  III: 11334599-11342227
Chromosome . Primary Identifier  III Chromosome Location . Start  11334599
Chromosome Location . End  11342227 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28D6.5g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012125 T28D6.5 T28D6.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28D6.5g T28D6.5g 2373   III: 11334827-11334954

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28D6.5g.1 11334599 11342227 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105414   356   III: 11334599-11334954 Caenorhabditis elegans
Exon105426   229   III: 11335438-11335666 Caenorhabditis elegans
Exon105433   81   III: 11337438-11337518 Caenorhabditis elegans
Exon105440   102   III: 11337937-11338038 Caenorhabditis elegans
Exon105451   126   III: 11338962-11339087 Caenorhabditis elegans
Exon105458   438   III: 11339134-11339571 Caenorhabditis elegans
Exon105465   183   III: 11339706-11339888 Caenorhabditis elegans
Exon105472   446   III: 11339945-11340390 Caenorhabditis elegans
Exon105479   353   III: 11340470-11340822 Caenorhabditis elegans
Exon105483   158   III: 11340940-11341097 Caenorhabditis elegans
Exon105487   453   III: 11341775-11342227 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28D6.5g.1 11334599 11342227 1

1 Sequence

Length
2925

1 Sequence Ontology Term

Identifier Name Description
transcript