WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28D6.5d.1 Sequence Name  T28D6.5d.1
Length (nt)  2214   Chromosome Location  III: 11334827-11341809
Chromosome . Primary Identifier  III Chromosome Location . Start  11334827
Chromosome Location . End  11341809 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28D6.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012125 T28D6.5 T28D6.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28D6.5d T28D6.5d 2214   III: 11334827-11334954

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28D6.5d.1 11334827 11341809 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105415   128   III: 11334827-11334954 Caenorhabditis elegans
Exon105423   229   III: 11335438-11335666 Caenorhabditis elegans
Exon105430   81   III: 11337438-11337518 Caenorhabditis elegans
Exon105434   93   III: 11337937-11338029 Caenorhabditis elegans
Exon105443   102   III: 11338314-11338415 Caenorhabditis elegans
Exon105448   126   III: 11338962-11339087 Caenorhabditis elegans
Exon105455   438   III: 11339134-11339571 Caenorhabditis elegans
Exon105462   183   III: 11339706-11339888 Caenorhabditis elegans
Exon105469   446   III: 11339945-11340390 Caenorhabditis elegans
Exon105476   353   III: 11340470-11340822 Caenorhabditis elegans
Exon105484   35   III: 11341775-11341809 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28D6.5d.1 11334827 11341809 1

1 Sequence

Length
2214

1 Sequence Ontology Term

Identifier Name Description
transcript