WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28D6.5c.1 Sequence Name  T28D6.5c.1
Length (nt)  2420   Chromosome Location  III: 11334893-11342016
Chromosome . Primary Identifier  III Chromosome Location . Start  11334893
Chromosome Location . End  11342016 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28D6.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012125 T28D6.5 T28D6.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28D6.5c T28D6.5c 2307   III: 11334893-11334954

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28D6.5c.1 11334893 11342016 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105417   62   III: 11334893-11334954 Caenorhabditis elegans
Exon105422   229   III: 11335438-11335666 Caenorhabditis elegans
Exon105429   81   III: 11337438-11337518 Caenorhabditis elegans
Exon105438   102   III: 11337937-11338038 Caenorhabditis elegans
Exon105447   126   III: 11338962-11339087 Caenorhabditis elegans
Exon105454   438   III: 11339134-11339571 Caenorhabditis elegans
Exon105461   183   III: 11339706-11339888 Caenorhabditis elegans
Exon105468   446   III: 11339945-11340390 Caenorhabditis elegans
Exon105475   353   III: 11340470-11340822 Caenorhabditis elegans
Exon105481   158   III: 11340940-11341097 Caenorhabditis elegans
Exon105485   242   III: 11341775-11342016 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28D6.5c.1 11334893 11342016 1

1 Sequence

Length
2420

1 Sequence Ontology Term

Identifier Name Description
transcript