WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28D6.5a.1 Sequence Name  T28D6.5a.1
Length (nt)  2583   Chromosome Location  III: 11334893-11342235
Chromosome . Primary Identifier  III Chromosome Location . Start  11334893
Chromosome Location . End  11342235 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28D6.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012125 T28D6.5 T28D6.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28D6.5a T28D6.5a 2157   III: 11334893-11334954

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28D6.5a.1 11334893 11342235 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105418   62   III: 11334893-11334954 Caenorhabditis elegans
Exon105420   229   III: 11335438-11335666 Caenorhabditis elegans
Exon105427   81   III: 11337438-11337518 Caenorhabditis elegans
Exon105436   102   III: 11337937-11338038 Caenorhabditis elegans
Exon105441   102   III: 11338314-11338415 Caenorhabditis elegans
Exon105445   126   III: 11338962-11339087 Caenorhabditis elegans
Exon105452   438   III: 11339134-11339571 Caenorhabditis elegans
Exon105459   183   III: 11339706-11339888 Caenorhabditis elegans
Exon105466   446   III: 11339945-11340390 Caenorhabditis elegans
Exon105473   353   III: 11340470-11340822 Caenorhabditis elegans
Exon105488   461   III: 11341775-11342235 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28D6.5a.1 11334893 11342235 1

1 Sequence

Length
2583

1 Sequence Ontology Term

Identifier Name Description
transcript