WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3B.1.1 Sequence Name  Y47D3B.1.1
Length (nt)  1729   Chromosome Location  III: 11382222-11388669
Chromosome . Primary Identifier  III Chromosome Location . Start  11382222
Chromosome Location . End  11388669 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3B.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012939 subs-4 Y47D3B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3B.1 Y47D3B.1 1572   III: 11382281-11382319

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3B.1.1 11382222 11388669 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105550   98   III: 11382222-11382319 Caenorhabditis elegans
Exon105551   118   III: 11382954-11383071 Caenorhabditis elegans
Exon105552   150   III: 11383122-11383271 Caenorhabditis elegans
Exon105553   118   III: 11383323-11383440 Caenorhabditis elegans
Exon105554   60   III: 11383489-11383548 Caenorhabditis elegans
Exon105555   394   III: 11384719-11385112 Caenorhabditis elegans
Exon105556   187   III: 11385967-11386153 Caenorhabditis elegans
Exon105557   169   III: 11387345-11387513 Caenorhabditis elegans
Exon105558   130   III: 11387566-11387695 Caenorhabditis elegans
Exon105559   127   III: 11388214-11388340 Caenorhabditis elegans
Exon105561   178   III: 11388492-11388669 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3B.1.1 11382222 11388669 1

1 Sequence

Length
1729

1 Sequence Ontology Term

Identifier Name Description
transcript