WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3B.5a.1 Sequence Name  Y47D3B.5a.1
Length (nt)  3785   Chromosome Location  III: 11410748-11424659
Chromosome . Primary Identifier  III Chromosome Location . Start  11410748
Chromosome Location . End  11424659 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3B.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006683 twk-31 Y47D3B.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3B.5a Y47D3B.5a 3267   III: 11410748-11410851

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3B.5a.1 11410748 11424659 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105567   104   III: 11410748-11410851 Caenorhabditis elegans
Exon105568   181   III: 11414324-11414504 Caenorhabditis elegans
Exon105571   111   III: 11415365-11415475 Caenorhabditis elegans
Exon105573   128   III: 11415532-11415659 Caenorhabditis elegans
Exon105575   93   III: 11415819-11415911 Caenorhabditis elegans
Exon105577   179   III: 11416640-11416818 Caenorhabditis elegans
Exon105579   139   III: 11416869-11417007 Caenorhabditis elegans
Exon105581   221   III: 11417898-11418118 Caenorhabditis elegans
Exon105583   143   III: 11418191-11418333 Caenorhabditis elegans
Exon105585   225   III: 11418385-11418609 Caenorhabditis elegans
Exon105587   68   III: 11419027-11419094 Caenorhabditis elegans
Exon105589   178   III: 11419143-11419320 Caenorhabditis elegans
Exon105591   129   III: 11419373-11419501 Caenorhabditis elegans
Exon105593   153   III: 11419983-11420135 Caenorhabditis elegans
Exon105595   69   III: 11420186-11420254 Caenorhabditis elegans
Exon105597   185   III: 11420309-11420493 Caenorhabditis elegans
Exon105599   100   III: 11420537-11420636 Caenorhabditis elegans
Exon105601   99   III: 11421412-11421510 Caenorhabditis elegans
Exon105603   539   III: 11421562-11422100 Caenorhabditis elegans
Exon105606   154   III: 11422928-11423081 Caenorhabditis elegans
Exon105608   25   III: 11423188-11423212 Caenorhabditis elegans
Exon105609   102   III: 11423441-11423542 Caenorhabditis elegans
Exon105611   460   III: 11424200-11424659 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3B.5a.1 11410748 11424659 1

1 Sequence

Length
3785

1 Sequence Ontology Term

Identifier Name Description
transcript