WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3B.7.1 Sequence Name  Y47D3B.7.1
Length (nt)  3394   Chromosome Location  III: 11428367-11442566
Chromosome . Primary Identifier  III Chromosome Location . Start  11428367
Chromosome Location . End  11442566 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3B.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004735 sbp-1 Y47D3B.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3B.7 Y47D3B.7 3342   III: 11428418-11428609

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3B.7.1 11428367 11442566 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105617   243   III: 11428367-11428609 Caenorhabditis elegans
Exon105618   361   III: 11428665-11429025 Caenorhabditis elegans
Exon105619   154   III: 11436957-11437110 Caenorhabditis elegans
Exon105620   228   III: 11437157-11437384 Caenorhabditis elegans
Exon105621   397   III: 11437444-11437840 Caenorhabditis elegans
Exon105622   529   III: 11438150-11438678 Caenorhabditis elegans
Exon105623   194   III: 11438724-11438917 Caenorhabditis elegans
Exon105624   236   III: 11439441-11439676 Caenorhabditis elegans
Exon105625   420   III: 11440021-11440440 Caenorhabditis elegans
Exon105626   109   III: 11440494-11440602 Caenorhabditis elegans
Exon105627   310   III: 11441374-11441683 Caenorhabditis elegans
Exon105628   133   III: 11441942-11442074 Caenorhabditis elegans
Exon105629   80   III: 11442487-11442566 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3B.7.1 11428367 11442566 -1

1 Sequence

Length
3394

1 Sequence Ontology Term

Identifier Name Description
transcript