WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y66D12A.17.1 Sequence Name  Y66D12A.17.1
Length (nt)  2481   Chromosome Location  III: 11512862-11523759
Chromosome . Primary Identifier  III Chromosome Location . Start  11512862
Chromosome Location . End  11523759 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y66D12A.17.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013443 such-1 Y66D12A.17 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y66D12A.17 Y66D12A.17 2397   III: 11512945-11513150

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y66D12A.17.1 11512862 11523759 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105721   289   III: 11512862-11513150 Caenorhabditis elegans
Exon105722   103   III: 11513198-11513300 Caenorhabditis elegans
Exon105723   519   III: 11515488-11516006 Caenorhabditis elegans
Exon105724   103   III: 11516386-11516488 Caenorhabditis elegans
Exon105725   120   III: 11517184-11517303 Caenorhabditis elegans
Exon105726   129   III: 11517483-11517611 Caenorhabditis elegans
Exon105727   70   III: 11517673-11517742 Caenorhabditis elegans
Exon105728   158   III: 11518210-11518367 Caenorhabditis elegans
Exon105729   399   III: 11521111-11521509 Caenorhabditis elegans
Exon105730   264   III: 11523048-11523311 Caenorhabditis elegans
Exon105731   126   III: 11523382-11523507 Caenorhabditis elegans
Exon105733   201   III: 11523559-11523759 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y66D12A.17.1 11512862 11523759 -1

1 Sequence

Length
2481

1 Sequence Ontology Term

Identifier Name Description
transcript