WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y56A3A.4a.1 Sequence Name  Y56A3A.4a.1
Length (nt)  1122   Chromosome Location  III: 11862393-11869281
Chromosome . Primary Identifier  III Chromosome Location . Start  11862393
Chromosome Location . End  11869281 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y56A3A.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006396 taf-12 Y56A3A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y56A3A.4a Y56A3A.4a 1029   III: 11862479-11862610

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y56A3A.4a.1 11862393 11869281 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon106188   218   III: 11862393-11862610 Caenorhabditis elegans
Exon106189   204   III: 11863399-11863602 Caenorhabditis elegans
Exon106191   186   III: 11864947-11865132 Caenorhabditis elegans
Exon106193   96   III: 11865625-11865720 Caenorhabditis elegans
Exon106195   182   III: 11866025-11866206 Caenorhabditis elegans
Exon106197   133   III: 11868723-11868855 Caenorhabditis elegans
Exon106199   103   III: 11869179-11869281 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y56A3A.4a.1 11862393 11869281 -1

1 Sequence

Length
1122

1 Sequence Ontology Term

Identifier Name Description
transcript