WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y56A3A.7a.1 Sequence Name  Y56A3A.7a.1
Length (nt)  1558   Chromosome Location  III: 11933990-11947017
Chromosome . Primary Identifier  III Chromosome Location . Start  11933990
Chromosome Location . End  11947017 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y56A3A.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013228 Y56A3A.7 Y56A3A.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y56A3A.7a Y56A3A.7a 1374   III: 11934166-11934180

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y56A3A.7a.1 11933990 11947017 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon106309   191   III: 11933990-11934180 Caenorhabditis elegans
Exon106319   127   III: 11941165-11941291 Caenorhabditis elegans
Exon106321   190   III: 11941374-11941563 Caenorhabditis elegans
Exon106323   164   III: 11942562-11942725 Caenorhabditis elegans
Exon106325   256   III: 11944849-11945104 Caenorhabditis elegans
Exon106327   97   III: 11945967-11946063 Caenorhabditis elegans
Exon106329   279   III: 11946138-11946416 Caenorhabditis elegans
Exon106331   93   III: 11946664-11946756 Caenorhabditis elegans
Exon106333   111   III: 11946801-11946911 Caenorhabditis elegans
Exon106335   50   III: 11946968-11947017 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y56A3A.7a.1 11933990 11947017 -1

1 Sequence

Length
1558

1 Sequence Ontology Term

Identifier Name Description
transcript