WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00255580 Gene Name  mir-8211
Sequence Name  ? Y56A3A.40 Organism  Caenorhabditis elegans
Automated Description  Is affected by etr-1 based on RNA-seq studies. Biotype  SO:0001265
Genetic Position  III :13.5265± Length (nt)  ? 65
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00255580

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y56A3A.40b Y56A3A.40b 23   III: 11936916-11936938
Transcript:Y56A3A.40a Y56A3A.40a 20   III: 11936961-11936980
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00037553

6 Allele

Public Name
gk963887
gk964363
gk964364
gk963799
n4607
gk962424

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00255580 11936916 11936980 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts of noncoding genes that showed significantly increased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_enriched_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00255580 11936916 11936980 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
65

1 Sequence Ontology Term