WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y79H2A.11a.1 Sequence Name  Y79H2A.11a.1
Length (nt)  2508   Chromosome Location  III: 12061713-12072070
Chromosome . Primary Identifier  III Chromosome Location . Start  12061713
Chromosome Location . End  12072070 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y79H2A.11a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006993 zyg-8 Y79H2A.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y79H2A.11a Y79H2A.11a 2409   III: 12061739-12061925

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y79H2A.11a.1 12061713 12072070 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon106628   213   III: 12061713-12061925 Caenorhabditis elegans
Exon106629   907   III: 12062925-12063831 Caenorhabditis elegans
Exon106631   234   III: 12064854-12065087 Caenorhabditis elegans
Exon106633   177   III: 12065737-12065913 Caenorhabditis elegans
Exon106635   181   III: 12067135-12067315 Caenorhabditis elegans
Exon106637   147   III: 12068077-12068223 Caenorhabditis elegans
Exon106639   300   III: 12069495-12069794 Caenorhabditis elegans
Exon106641   99   III: 12071015-12071113 Caenorhabditis elegans
Exon106644   250   III: 12071821-12072070 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y79H2A.11a.1 12061713 12072070 1

1 Sequence

Length
2508

1 Sequence Ontology Term

Identifier Name Description
transcript