WormMine: Gene WBGene00219629

• WormBase Gene ID: WBGene00219629
• Gene Name: linc-87
• Sequence Name: Y75B8A.61
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in e2; mc2; mc2DL; and pharyngeal epithelial cell based on single-cell RNA-seq studies. Is affected by xpf-1 based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: III :15.2193±
• Length (nt): 1557

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219629

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y75B8A.61	Y75B8A.61	440	III: 12149562-12151118

Other

0 CDSs

0 RNAi Result

48 Allele

• gk963887
• gk964363
• gk964364
• gk187699
• gk187700
• gk187701
• gk187702
• gk187703
• WBVar01579265
• WBVar00219007
• WBVar01271827
• WBVar01271826
• WBVar01271825
• gk485100
• WBVar01793480
• WBVar01702331
• gk490928
• WBVar01702330
• gk452183
• gk484378
• gk349440
• WBVar02051214
• WBVar02078919
• WBVar01702329
• h8938
• WBVar01963710
• gk590497
• WBVar01908440
• WBVar01963709
• WBVar01724292

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219629
• Start: 12149562
• End: 12151118
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_12144016..12149561
• Length (nt): 5546
• Chromosome Location: III: 12144016-12149561
• Organism: Caenorhabditis elegans

8 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in xpf-1(tm2842) comparing to in N2 animals.	DESeq2 1.14.1, fold change > 2, FDR < 0.01.	WBPaper00062497:xpf-1(tm2842)_upregulated
Bacteria: B.subtilis	Transcripts that showed significantly increased expression when animals were fed by probiotic bacteria strain B.subtilis PXN21 comparing to animals fed with OP50 from L1 till day 1 adult.	edgeR 3.16.5, FDR < 0.05, fold change > 2.	WBPaper00059117:B.subtilis_upregulated
	Single-cell RNA-Seq cell group 9_0 expressed in epithelium.	scVI 0.6.0	WBPaper00065841:9_0
	Single-cell RNA-Seq cell group 9_1 expressed in epithelium.	scVI 0.6.0	WBPaper00065841:9_1
	Single-cell RNA-Seq cell group 9_2 expressed in epithelium.	scVI 0.6.0	WBPaper00065841:9_2
	Single-cell RNA-Seq cell group 24_0 expressed in epithelium.	scVI 0.6.0	WBPaper00065841:24_0
	Transcripts that showed significantly decreased expression after 24 hours of induction of human beta Amyloid at young adult stage	A 2-fold change in expression level and a false discovery rate analog of p < 0.05.	WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
	Transcripts that showed significantly increased expression in lin-53(RNAi) embryos comparing to control animals.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00067044:lin-53(RNAi)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219629
• Start: 12149562
• End: 12151118
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1557

1 Sequence Ontology Term