WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y49E10.11a.1 Sequence Name  Y49E10.11a.1
Length (nt)  4185   Chromosome Location  III: 12398901-12421718
Chromosome . Primary Identifier  III Chromosome Location . Start  12398901
Chromosome Location . End  12421718 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y49E10.11a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013034 tat-1 Y49E10.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49E10.11a Y49E10.11a 3420   III: 12399363-12399460

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y49E10.11a.1 12398901 12421718 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107076   560   III: 12398901-12399460 Caenorhabditis elegans
Exon107080   125   III: 12400046-12400170 Caenorhabditis elegans
Exon107085   93   III: 12404785-12404877 Caenorhabditis elegans
Exon107089   257   III: 12405722-12405978 Caenorhabditis elegans
Exon107093   141   III: 12407302-12407442 Caenorhabditis elegans
Exon107097   134   III: 12407652-12407785 Caenorhabditis elegans
Exon107101   155   III: 12407928-12408082 Caenorhabditis elegans
Exon107105   530   III: 12409690-12410219 Caenorhabditis elegans
Exon107109   539   III: 12412124-12412662 Caenorhabditis elegans
Exon107113   301   III: 12413753-12414053 Caenorhabditis elegans
Exon107117   113   III: 12414860-12414972 Caenorhabditis elegans
Exon107121   240   III: 12415563-12415802 Caenorhabditis elegans
Exon107125   307   III: 12417470-12417776 Caenorhabditis elegans
Exon107129   186   III: 12418846-12419031 Caenorhabditis elegans
Exon107133   100   III: 12420074-12420173 Caenorhabditis elegans
Exon107137   58   III: 12420224-12420281 Caenorhabditis elegans
Exon107142   101   III: 12420622-12420722 Caenorhabditis elegans
Exon107146   245   III: 12421474-12421718 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y49E10.11a.1 12398901 12421718 -1

1 Sequence

Length
4185

1 Sequence Ontology Term

Identifier Name Description
transcript