WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y49E10.11b.1 Sequence Name  Y49E10.11b.1
Length (nt)  3270   Chromosome Location  III: 12404132-12420664
Chromosome . Primary Identifier  III Chromosome Location . Start  12404132
Chromosome Location . End  12420664 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y49E10.11b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013034 tat-1 Y49E10.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49E10.11b Y49E10.11b 3270   III: 12404132-12404204

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y49E10.11b.1 12404132 12420664 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107084   73   III: 12404132-12404204 Caenorhabditis elegans
Exon107087   93   III: 12404785-12404877 Caenorhabditis elegans
Exon107091   257   III: 12405722-12405978 Caenorhabditis elegans
Exon107095   141   III: 12407302-12407442 Caenorhabditis elegans
Exon107099   134   III: 12407652-12407785 Caenorhabditis elegans
Exon107103   155   III: 12407928-12408082 Caenorhabditis elegans
Exon107107   530   III: 12409690-12410219 Caenorhabditis elegans
Exon107111   539   III: 12412124-12412662 Caenorhabditis elegans
Exon107115   301   III: 12413753-12414053 Caenorhabditis elegans
Exon107119   113   III: 12414860-12414972 Caenorhabditis elegans
Exon107123   240   III: 12415563-12415802 Caenorhabditis elegans
Exon107127   307   III: 12417470-12417776 Caenorhabditis elegans
Exon107131   186   III: 12418846-12419031 Caenorhabditis elegans
Exon107135   100   III: 12420074-12420173 Caenorhabditis elegans
Exon107139   58   III: 12420224-12420281 Caenorhabditis elegans
Exon107141   43   III: 12420622-12420664 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y49E10.11b.1 12404132 12420664 -1

1 Sequence

Length
3270

1 Sequence Ontology Term

Identifier Name Description
transcript