WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y49E10.10.2 Sequence Name  Y49E10.10.2
Length (nt)  1331   Chromosome Location  III: 12396020-12398943
Chromosome . Primary Identifier  III Chromosome Location . Start  12396020
Chromosome Location . End  12398943 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y49E10.10.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013033 Y49E10.10 Y49E10.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49E10.10 Y49E10.10 1254   III: 12396057-12396129

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y49E10.10.2 12396020 12398943 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107104   110   III: 12396020-12396129 Caenorhabditis elegans
Exon107107   48   III: 12396178-12396225 Caenorhabditis elegans
Exon107109   300   III: 12396722-12397021 Caenorhabditis elegans
Exon107111   267   III: 12397074-12397340 Caenorhabditis elegans
Exon107113   81   III: 12397397-12397477 Caenorhabditis elegans
Exon107115   99   III: 12397528-12397626 Caenorhabditis elegans
Exon107117   48   III: 12397713-12397760 Caenorhabditis elegans
Exon107119   84   III: 12397810-12397893 Caenorhabditis elegans
Exon107121   109   III: 12397952-12398060 Caenorhabditis elegans
Exon107123   185   III: 12398759-12398943 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y49E10.10.2 12396020 12398943 1

1 Sequence

Length
1331

1 Sequence Ontology Term

Identifier Name Description
transcript