WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y49E10.20 Sequence Name  Y49E10.20
Length (nt)  1605   Chromosome Location  III: 12453726-12453815
Chromosome . Primary Identifier  III Chromosome Location . Start  12453726
Chromosome Location . End  12453815
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y49E10.20

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE22235 SCAV-3 60.2 534 Caenorhabditis elegans
 

Other

7 RNAi

WormBase ID
WBRNAi00057016
WBRNAi00037292
WBRNAi00020777
WBRNAi00076802
WBRNAi00006827
WBRNAi00062442
WBRNAi00078834

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y49E10.20 12453726 12453815 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013039 scav-3 Y49E10.20 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y49E10.20 12453726 12453815 -1
CDS:Y49E10.20 12453869 12454064 -1
CDS:Y49E10.20 12454113 12454356 -1
CDS:Y49E10.20 12454436 12454817 -1
CDS:Y49E10.20 12454922 12455050 -1
CDS:Y49E10.20 12455347 12455596 -1
CDS:Y49E10.20 12456472 12456659 -1
CDS:Y49E10.20 12456721 12456846 -1

1 Sequence

Length
1605

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y49E10.20.1 Y49E10.20.1 1747   III: 12453588-12456850