WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y111B2A.4a Sequence Name  Y111B2A.4a
Length (nt)  3987   Chromosome Location  III: 12499563-12499688
Chromosome . Primary Identifier  III Chromosome Location . Start  12499563
Chromosome Location . End  12499688
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE44299 SQL-1, isoform a 151.7 1328 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00055367
WBRNAi00055368
WBRNAi00055369
WBRNAi00019870
WBRNAi00019873
WBRNAi00019874
WBRNAi00006900
WBRNAi00036563

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y111B2A.4a 12499563 12499688 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013730 sql-1 Y111B2A.4 Caenorhabditis elegans

18 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y111B2A.4a 12499563 12499688 1
CDS:Y111B2A.4a 12499798 12499986 1
CDS:Y111B2A.4a 12501034 12501333 1
CDS:Y111B2A.4a 12504835 12505173 1
CDS:Y111B2A.4a 12506133 12506533 1
CDS:Y111B2A.4a 12509808 12510007 1
CDS:Y111B2A.4a 12510841 12511085 1
CDS:Y111B2A.4a 12513154 12513564 1
CDS:Y111B2A.4a 12515568 12515730 1
CDS:Y111B2A.4a 12516886 12517055 1
CDS:Y111B2A.4a 12517104 12517295 1
CDS:Y111B2A.4a 12519970 12520347 1
CDS:Y111B2A.4a 12522351 12522602 1
CDS:Y111B2A.4a 12523752 12523875 1
CDS:Y111B2A.4a 12524118 12524302 1
CDS:Y111B2A.4a 12526243 12526367 1
CDS:Y111B2A.4a 12527117 12527224 1
CDS:Y111B2A.4a 12527741 12527819 1

1 Sequence

Length
3987

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y111B2A.4a.1 Y111B2A.4a.1 4226   III: 12499557-12528052