WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Nc Primary Transcript :

WormMine ID  Transcript:Y111B2A.4b Sequence Name  Y111B2A.4b
Length (nt)  4083   Chromosome Location  III: 12499563-12527819
Chromosome . Primary Identifier  III Chromosome Location . Start  12499563
Chromosome Location . End  12527819 Method  non_coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.4b

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013730 sql-1 Y111B2A.4 Caenorhabditis elegans
 

Other

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.4b 12499563 12527819 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107287   126   III: 12499563-12499688 Caenorhabditis elegans
Exon107289   189   III: 12499798-12499986 Caenorhabditis elegans
Exon107291   300   III: 12501034-12501333 Caenorhabditis elegans
Exon107293   339   III: 12504835-12505173 Caenorhabditis elegans
Exon107295   401   III: 12506133-12506533 Caenorhabditis elegans
Exon107297   200   III: 12509808-12510007 Caenorhabditis elegans
Exon107299   245   III: 12510841-12511085 Caenorhabditis elegans
Exon107300   96   III: 12512750-12512845 Caenorhabditis elegans
Exon107302   411   III: 12513154-12513564 Caenorhabditis elegans
Exon107304   163   III: 12515568-12515730 Caenorhabditis elegans
Exon107306   170   III: 12516886-12517055 Caenorhabditis elegans
Exon107308   192   III: 12517104-12517295 Caenorhabditis elegans
Exon107311   378   III: 12519970-12520347 Caenorhabditis elegans
Exon107313   252   III: 12522351-12522602 Caenorhabditis elegans
Exon107315   124   III: 12523752-12523875 Caenorhabditis elegans
Exon107317   185   III: 12524118-12524302 Caenorhabditis elegans
Exon107319   125   III: 12526243-12526367 Caenorhabditis elegans
Exon107321   108   III: 12527117-12527224 Caenorhabditis elegans
Exon107322   79   III: 12527741-12527819 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.4b 12499563 12527819 1

1 Sequence

Length
4083

1 Sequence Ontology Term

Identifier Name Description
transcript