WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.4a.1 Sequence Name  Y111B2A.4a.1
Length (nt)  4226   Chromosome Location  III: 12499557-12528052
Chromosome . Primary Identifier  III Chromosome Location . Start  12499557
Chromosome Location . End  12528052 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013730 sql-1 Y111B2A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.4a Y111B2A.4a 3987   III: 12499563-12499688

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.4a.1 12499557 12528052 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107334   132   III: 12499557-12499688 Caenorhabditis elegans
Exon107337   189   III: 12499798-12499986 Caenorhabditis elegans
Exon107339   300   III: 12501034-12501333 Caenorhabditis elegans
Exon107341   339   III: 12504835-12505173 Caenorhabditis elegans
Exon107343   401   III: 12506133-12506533 Caenorhabditis elegans
Exon107345   200   III: 12509808-12510007 Caenorhabditis elegans
Exon107347   245   III: 12510841-12511085 Caenorhabditis elegans
Exon107350   411   III: 12513154-12513564 Caenorhabditis elegans
Exon107352   163   III: 12515568-12515730 Caenorhabditis elegans
Exon107354   170   III: 12516886-12517055 Caenorhabditis elegans
Exon107356   192   III: 12517104-12517295 Caenorhabditis elegans
Exon107359   378   III: 12519970-12520347 Caenorhabditis elegans
Exon107361   252   III: 12522351-12522602 Caenorhabditis elegans
Exon107363   124   III: 12523752-12523875 Caenorhabditis elegans
Exon107365   185   III: 12524118-12524302 Caenorhabditis elegans
Exon107367   125   III: 12526243-12526367 Caenorhabditis elegans
Exon107369   108   III: 12527117-12527224 Caenorhabditis elegans
Exon107372   312   III: 12527741-12528052 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.4a.1 12499557 12528052 1

1 Sequence

Length
4226

1 Sequence Ontology Term

Identifier Name Description
transcript