WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.8c.1 Sequence Name  Y111B2A.8c.1
Length (nt)  2781   Chromosome Location  III: 12538664-12575401
Chromosome . Primary Identifier  III Chromosome Location . Start  12538664
Chromosome Location . End  12575401 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.8c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013732 aakg-1 Y111B2A.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.8c Y111B2A.8c 2175   III: 12539004-12539285

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.8c.1 12538664 12575401 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107339   622   III: 12538664-12539285 Caenorhabditis elegans
Exon107348   111   III: 12540289-12540399 Caenorhabditis elegans
Exon107355   276   III: 12540677-12540952 Caenorhabditis elegans
Exon107362   256   III: 12542693-12542948 Caenorhabditis elegans
Exon107369   223   III: 12544619-12544841 Caenorhabditis elegans
Exon107374   73   III: 12547235-12547307 Caenorhabditis elegans
Exon107384   252   III: 12559999-12560250 Caenorhabditis elegans
Exon107387   143   III: 12561315-12561457 Caenorhabditis elegans
Exon107390   75   III: 12561805-12561879 Caenorhabditis elegans
Exon107394   222   III: 12572642-12572863 Caenorhabditis elegans
Exon107396   192   III: 12574633-12574824 Caenorhabditis elegans
Exon107398   74   III: 12574877-12574950 Caenorhabditis elegans
Exon107400   70   III: 12575091-12575160 Caenorhabditis elegans
Exon107403   192   III: 12575210-12575401 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.8c.1 12538664 12575401 -1

1 Sequence

Length
2781

1 Sequence Ontology Term

Identifier Name Description
transcript