WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.8d.1 Sequence Name  Y111B2A.8d.1
Length (nt)  2506   Chromosome Location  III: 12538664-12563078
Chromosome . Primary Identifier  III Chromosome Location . Start  12538664
Chromosome Location . End  12563078 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.8d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013732 aakg-1 Y111B2A.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.8d Y111B2A.8d 2166   III: 12539004-12539285

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.8d.1 12538664 12563078 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107340   622   III: 12538664-12539285 Caenorhabditis elegans
Exon107349   111   III: 12540289-12540399 Caenorhabditis elegans
Exon107356   276   III: 12540677-12540952 Caenorhabditis elegans
Exon107363   256   III: 12542693-12542948 Caenorhabditis elegans
Exon107370   223   III: 12544619-12544841 Caenorhabditis elegans
Exon107375   73   III: 12547235-12547307 Caenorhabditis elegans
Exon107385   252   III: 12559999-12560250 Caenorhabditis elegans
Exon107388   143   III: 12561315-12561457 Caenorhabditis elegans
Exon107391   75   III: 12561805-12561879 Caenorhabditis elegans
Exon107393   475   III: 12562604-12563078 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.8d.1 12538664 12563078 -1

1 Sequence

Length
2506

1 Sequence Ontology Term

Identifier Name Description
transcript