WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.14a.2 Sequence Name  Y111B2A.14a.2
Length (nt)  4516   Chromosome Location  III: 12626568-12651757
Chromosome . Primary Identifier  III Chromosome Location . Start  12626568
Chromosome Location . End  12651757 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.14a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004161 pqn-80 Y111B2A.14 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.14a Y111B2A.14a 4251   III: 12626575-12626718

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14a.2 12626568 12651757 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107501   151   III: 12626568-12626718 Caenorhabditis elegans
Exon107507   81   III: 12626764-12626844 Caenorhabditis elegans
Exon107515   108   III: 12626911-12627018 Caenorhabditis elegans
Exon107523   606   III: 12628701-12629306 Caenorhabditis elegans
Exon107536   306   III: 12630373-12630678 Caenorhabditis elegans
Exon107553   281   III: 12631927-12632207 Caenorhabditis elegans
Exon107569   73   III: 12634857-12634929 Caenorhabditis elegans
Exon107586   206   III: 12635548-12635753 Caenorhabditis elegans
Exon107610   51   III: 12635810-12635860 Caenorhabditis elegans
Exon107618   320   III: 12637489-12637808 Caenorhabditis elegans
Exon107634   206   III: 12638881-12639086 Caenorhabditis elegans
Exon107650   39   III: 12639647-12639685 Caenorhabditis elegans
Exon107665   117   III: 12641050-12641166 Caenorhabditis elegans
Exon107679   495   III: 12641820-12642314 Caenorhabditis elegans
Exon107703   126   III: 12644471-12644596 Caenorhabditis elegans
Exon107720   286   III: 12645025-12645310 Caenorhabditis elegans
Exon107737   273   III: 12645682-12645954 Caenorhabditis elegans
Exon107754   191   III: 12649659-12649849 Caenorhabditis elegans
Exon107772   143   III: 12650000-12650142 Caenorhabditis elegans
Exon107791   135   III: 12650194-12650328 Caenorhabditis elegans
Exon107825   161   III: 12651168-12651328 Caenorhabditis elegans
Exon107828   161   III: 12651597-12651757 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14a.2 12626568 12651757 1

1 Sequence

Length
4516

1 Sequence Ontology Term

Identifier Name Description
transcript