WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.14b.1 Sequence Name  Y111B2A.14b.1
Length (nt)  4869   Chromosome Location  III: 12626575-12651759
Chromosome . Primary Identifier  III Chromosome Location . Start  12626575
Chromosome Location . End  12651759 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.14b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004161 pqn-80 Y111B2A.14 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.14b Y111B2A.14b 4341   III: 12626575-12626718

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14b.1 12626575 12651759 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107505   144   III: 12626575-12626718 Caenorhabditis elegans
Exon107509   81   III: 12626764-12626844 Caenorhabditis elegans
Exon107517   108   III: 12626911-12627018 Caenorhabditis elegans
Exon107525   606   III: 12628701-12629306 Caenorhabditis elegans
Exon107538   306   III: 12630373-12630678 Caenorhabditis elegans
Exon107555   281   III: 12631927-12632207 Caenorhabditis elegans
Exon107571   73   III: 12634857-12634929 Caenorhabditis elegans
Exon107588   206   III: 12635548-12635753 Caenorhabditis elegans
Exon107612   51   III: 12635810-12635860 Caenorhabditis elegans
Exon107620   320   III: 12637489-12637808 Caenorhabditis elegans
Exon107636   206   III: 12638881-12639086 Caenorhabditis elegans
Exon107652   39   III: 12639647-12639685 Caenorhabditis elegans
Exon107667   117   III: 12641050-12641166 Caenorhabditis elegans
Exon107681   495   III: 12641820-12642314 Caenorhabditis elegans
Exon107695   90   III: 12643711-12643800 Caenorhabditis elegans
Exon107705   126   III: 12644471-12644596 Caenorhabditis elegans
Exon107722   286   III: 12645025-12645310 Caenorhabditis elegans
Exon107739   273   III: 12645682-12645954 Caenorhabditis elegans
Exon107756   191   III: 12649659-12649849 Caenorhabditis elegans
Exon107774   143   III: 12650000-12650142 Caenorhabditis elegans
Exon107793   135   III: 12650194-12650328 Caenorhabditis elegans
Exon107826   592   III: 12651168-12651759 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14b.1 12626575 12651759 1

1 Sequence

Length
4869

1 Sequence Ontology Term

Identifier Name Description
transcript