WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.14g.1 Sequence Name  Y111B2A.14g.1
Length (nt)  3762   Chromosome Location  III: 12628947-12651231
Chromosome . Primary Identifier  III Chromosome Location . Start  12628947
Chromosome Location . End  12651231 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.14g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004161 pqn-80 Y111B2A.14 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.14g Y111B2A.14g 3762   III: 12628947-12629306

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14g.1 12628947 12651231 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107532   360   III: 12628947-12629306 Caenorhabditis elegans
Exon107543   306   III: 12630373-12630678 Caenorhabditis elegans
Exon107560   281   III: 12631927-12632207 Caenorhabditis elegans
Exon107576   73   III: 12634857-12634929 Caenorhabditis elegans
Exon107593   206   III: 12635548-12635753 Caenorhabditis elegans
Exon107613   51   III: 12635810-12635860 Caenorhabditis elegans
Exon107625   320   III: 12637489-12637808 Caenorhabditis elegans
Exon107641   206   III: 12638881-12639086 Caenorhabditis elegans
Exon107657   39   III: 12639647-12639685 Caenorhabditis elegans
Exon107672   117   III: 12641050-12641166 Caenorhabditis elegans
Exon107686   495   III: 12641820-12642314 Caenorhabditis elegans
Exon107698   90   III: 12643711-12643800 Caenorhabditis elegans
Exon107710   126   III: 12644471-12644596 Caenorhabditis elegans
Exon107727   286   III: 12645025-12645310 Caenorhabditis elegans
Exon107744   273   III: 12645682-12645954 Caenorhabditis elegans
Exon107761   191   III: 12649659-12649849 Caenorhabditis elegans
Exon107779   143   III: 12650000-12650142 Caenorhabditis elegans
Exon107798   135   III: 12650194-12650328 Caenorhabditis elegans
Exon107813   64   III: 12651168-12651231 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.14g.1 12628947 12651231 1

1 Sequence

Length
3762

1 Sequence Ontology Term

Identifier Name Description
transcript