WormMine: Gene WBGene00194853

• WormBase Gene ID: WBGene00194853
• Gene Name: Y111B2A.29
• Sequence Name: Y111B2A.29
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by cep-1 based on RNA-seq studies.
• Biotype: SO:0002182
• Genetic Position: :±
• Length (nt): 1558

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00194853

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y111B2A.29	Y111B2A.29	454	III: 12694186-12695743

Other

0 CDSs

1 RNAi Result

• WBRNAi00036573

36 Allele

• gk963887
• gk188901
• gk188902
• gk756763
• WBVar01963938
• WBVar02049828
• gk927617
• gk418807
• gk393690
• gk522864
• gk639330
• WBVar02081949
• WBVar01542755
• WBVar01542754
• WBVar01542753
• WBVar01542752
• otn19749
• WBVar01338430
• WBVar01542751
• WBVar01542750
• WBVar01417023
• ttTI35587
• gk614926
• WBVar01509601
• WBVar01509602
• WBVar01509599
• WBVar01509600
• WBVar02051384
• WBVar01953336
• WBVar01832829

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00194853
• Start: 12694186
• End: 12695743
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in day 1 adult hermaphrodite comparing to in L4 larva daf-16(mu86);glp-1(e2141) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
	Transcripts that showed significantly increased expression in day 3 adult hermaphrodite comparing to in L4 larva fem-3(q20) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
	Genes that were not enriched in either spermatogenic fem-3(q96gf) nor oogenic fog-2(q71) gonads, according to RNAseq analysis.	To identify differentially expressed transcripts, authors used R/Bioconductor package DESeq.	WBPaper00045521:Gender_Neutral
	ncRNAs with significantly decreased expression in cep-1(gk138) than in N2 after UV irradiation, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_downregulated_UV
Bacteria infection: Pseudomonas aeruginosa PA14. 24 hours of exposure.	Small RNAs (21-26nt) that showed significantly decreased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours.	DESeq2, FDR < 0.05	WBPaper00056868:P.aeruginosa_downregulated_smallRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00194853
• Start: 12694186
• End: 12695743
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1558

1 Sequence Ontology Term