WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.22a.1 Sequence Name  Y111B2A.22a.1
Length (nt)  8002   Chromosome Location  III: 12714566-12744721
Chromosome . Primary Identifier  III Chromosome Location . Start  12714566
Chromosome Location . End  12744721 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.22a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007027 ssl-1 Y111B2A.22 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.22a Y111B2A.22a 7188   III: 12714588-12714868

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.22a.1 12714566 12744721 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107884   303   III: 12714566-12714868 Caenorhabditis elegans
Exon107886   105   III: 12715510-12715614 Caenorhabditis elegans
Exon107888   229   III: 12715671-12715899 Caenorhabditis elegans
Exon107891   786   III: 12718007-12718792 Caenorhabditis elegans
Exon107894   633   III: 12719442-12720074 Caenorhabditis elegans
Exon107897   831   III: 12721272-12722102 Caenorhabditis elegans
Exon107900   485   III: 12723287-12723771 Caenorhabditis elegans
Exon107903   955   III: 12725798-12726752 Caenorhabditis elegans
Exon107906   84   III: 12727230-12727313 Caenorhabditis elegans
Exon107909   144   III: 12727383-12727526 Caenorhabditis elegans
Exon107914   223   III: 12732466-12732688 Caenorhabditis elegans
Exon107917   287   III: 12734036-12734322 Caenorhabditis elegans
Exon107920   511   III: 12735248-12735758 Caenorhabditis elegans
Exon107923   735   III: 12737671-12738405 Caenorhabditis elegans
Exon107926   248   III: 12739984-12740231 Caenorhabditis elegans
Exon107929   227   III: 12741823-12742049 Caenorhabditis elegans
Exon107934   1216   III: 12743506-12744721 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.22a.1 12714566 12744721 1

1 Sequence

Length
8002

1 Sequence Ontology Term

Identifier Name Description
transcript