WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005752 Gene Name  srw-5
Sequence Name  ? ZC482.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by etr-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  III :18.6666 ±0.058826 Length (nt)  ? 2031
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005752

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

52 Allele

Public Name
gk963887
gk963552
gk189044
gk189043
gk189046
gk189045
gk189047
gk963763
gk963762
WBVar00182120
WBVar00182111
WBVar00182113
WBVar00182112
WBVar00182119
WBVar00182118
WBVar00182115
WBVar00182114
WBVar00182117
WBVar00182116
WBVar00237569
gk644304
gk868447
gk506018
gk604230
WBVar01832858
gk924347
gk464105
gk775999
gk432063
gk890612

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00005752 12769564 12771594 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_12771595..12771867   273 III: 12771595-12771867 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. WBPaper00060811:L1_vs_adult_upregulated_neural
  Transcripts of noncoding genes that showed significantly decreased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00005752 12769564 12771594 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
2031

1 Sequence Ontology Term