WormMine: Gene WBGene00202313

• WormBase Gene ID: WBGene00202313
• Gene Name: BE10.7
• Sequence Name: BE10.7
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in RIPL and sensory neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by daf-2 and set-2 based on microarray and RNA-seq studies. Is affected by silicon dioxide nanoparticle based on microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 150

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00202313

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:BE10.7	BE10.7	150	III: 12801772-12801921

Other

0 CDSs

0 RNAi Result

14 Allele

• gk963887
• gk963904
• gk963552
• gk963763
• gk963762
• gk960614
• gk963347
• WBVar02123796
• gk952896
• WBVar01273825
• WBVar01940452
• WBVar01999802
• gk932114
• gk802597

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00202313
• Start: 12801772
• End: 12801921
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_12801922..12804598
• Length (nt): 2677
• Chromosome Location: III: 12801922-12804598
• Organism: Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.	DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.	WBPaper00060014:set-2(tm1630)_downregulated
	Transcripts that showed significantly increased expression in animals after 24 hour exposure to 100ug per ml silica nanoparticles (SiNPs).	The random variance model (RVM)t-test was applied toidentify differentially expressed mRNAs and miRNAsbetween the SiNPs-treated group and the control group. P-value <0.05 and fold change (FC) >1.5 were considered as the threshold screening between the SiNP-treated groupand the control group.	WBPaper00060100:SiNP_upregulated_mRNA
	Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.	Fold change > 2, p-value < 0.05.	WBPaper00060661:sensory-neuron_enriched
	Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_downregulated
	Single-cell RNA-Seq cell group 70_1 expressed in neuron.	scVI 0.6.0	WBPaper00065841:70_1
	Single-cell RNA-Seq cell group 20_1 expressed in neuron.	scVI 0.6.0	WBPaper00065841:20_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00202313
• Start: 12801772
• End: 12801921
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 150

1 Sequence Ontology Term