WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F12.1.1 Sequence Name  F54F12.1.1
Length (nt)  4251   Chromosome Location  III: 13049416-13055442
Chromosome . Primary Identifier  III Chromosome Location . Start  13049416
Chromosome Location . End  13055442 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F12.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010072 F54F12.1 F54F12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F12.1 F54F12.1 3654   III: 13049617-13049966

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F12.1.1 13049416 13055442 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon108377   551   III: 13049416-13049966 Caenorhabditis elegans
Exon108378   233   III: 13050013-13050245 Caenorhabditis elegans
Exon108379   157   III: 13050590-13050746 Caenorhabditis elegans
Exon108380   148   III: 13050795-13050942 Caenorhabditis elegans
Exon108381   115   III: 13050990-13051104 Caenorhabditis elegans
Exon108382   175   III: 13051154-13051328 Caenorhabditis elegans
Exon108383   251   III: 13051563-13051813 Caenorhabditis elegans
Exon108384   2385   III: 13051861-13054245 Caenorhabditis elegans
Exon108385   175   III: 13055152-13055326 Caenorhabditis elegans
Exon108386   61   III: 13055382-13055442 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F12.1.1 13049416 13055442 -1

1 Sequence

Length
4251

1 Sequence Ontology Term

Identifier Name Description
transcript