WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39E4B.12c.1 Sequence Name  Y39E4B.12c.1
Length (nt)  2406   Chromosome Location  III: 13187390-13204897
Chromosome . Primary Identifier  III Chromosome Location . Start  13187390
Chromosome Location . End  13204897 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39E4B.12c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001630 gly-5 Y39E4B.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39E4B.12c Y39E4B.12c 1875   III: 13188136-13188243

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12c.1 13187390 13204897 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon108488   61   III: 13187390-13187450 Caenorhabditis elegans
Exon108496   134   III: 13188110-13188243 Caenorhabditis elegans
Exon108501   264   III: 13188299-13188562 Caenorhabditis elegans
Exon108507   119   III: 13190128-13190246 Caenorhabditis elegans
Exon108513   335   III: 13191292-13191626 Caenorhabditis elegans
Exon108519   332   III: 13194529-13194860 Caenorhabditis elegans
Exon108525   186   III: 13195993-13196178 Caenorhabditis elegans
Exon108531   129   III: 13197610-13197738 Caenorhabditis elegans
Exon108535   105   III: 13200916-13201020 Caenorhabditis elegans
Exon108543   129   III: 13203866-13203994 Caenorhabditis elegans
Exon108547   612   III: 13204286-13204897 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12c.1 13187390 13204897 1

1 Sequence

Length
2406

1 Sequence Ontology Term

Identifier Name Description
transcript