WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39E4B.12a.1 Sequence Name  Y39E4B.12a.1
Length (nt)  2408   Chromosome Location  III: 13187392-13204895
Chromosome . Primary Identifier  III Chromosome Location . Start  13187392
Chromosome Location . End  13204895 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39E4B.12a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001630 gly-5 Y39E4B.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39E4B.12a Y39E4B.12a 1881   III: 13188136-13188243

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12a.1 13187392 13204895 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon108489   59   III: 13187392-13187450 Caenorhabditis elegans
Exon108494   134   III: 13188110-13188243 Caenorhabditis elegans
Exon108497   264   III: 13188299-13188562 Caenorhabditis elegans
Exon108503   119   III: 13190128-13190246 Caenorhabditis elegans
Exon108509   335   III: 13191292-13191626 Caenorhabditis elegans
Exon108515   332   III: 13194529-13194860 Caenorhabditis elegans
Exon108521   186   III: 13195993-13196178 Caenorhabditis elegans
Exon108527   129   III: 13197610-13197738 Caenorhabditis elegans
Exon108533   111   III: 13200771-13200881 Caenorhabditis elegans
Exon108539   129   III: 13203866-13203994 Caenorhabditis elegans
Exon108545   610   III: 13204286-13204895 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12a.1 13187392 13204895 1

1 Sequence

Length
2408

1 Sequence Ontology Term

Identifier Name Description
transcript