WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39E4B.12b.1 Sequence Name  Y39E4B.12b.1
Length (nt)  2401   Chromosome Location  III: 13187392-13204897
Chromosome . Primary Identifier  III Chromosome Location . Start  13187392
Chromosome Location . End  13204897 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39E4B.12b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001630 gly-5 Y39E4B.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39E4B.12b Y39E4B.12b 1872   III: 13188136-13188243

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12b.1 13187392 13204897 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon108490   59   III: 13187392-13187450 Caenorhabditis elegans
Exon108495   134   III: 13188110-13188243 Caenorhabditis elegans
Exon108499   264   III: 13188299-13188562 Caenorhabditis elegans
Exon108505   119   III: 13190128-13190246 Caenorhabditis elegans
Exon108511   335   III: 13191292-13191626 Caenorhabditis elegans
Exon108517   332   III: 13194529-13194860 Caenorhabditis elegans
Exon108523   186   III: 13195993-13196178 Caenorhabditis elegans
Exon108529   129   III: 13197610-13197738 Caenorhabditis elegans
Exon108537   102   III: 13202487-13202588 Caenorhabditis elegans
Exon108541   129   III: 13203866-13203994 Caenorhabditis elegans
Exon108546   612   III: 13204286-13204897 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12b.1 13187392 13204897 1

1 Sequence

Length
2401

1 Sequence Ontology Term

Identifier Name Description
transcript