WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39E4B.12a.2 Sequence Name  Y39E4B.12a.2
Length (nt)  2362   Chromosome Location  III: 13188102-13204900
Chromosome . Primary Identifier  III Chromosome Location . Start  13188102
Chromosome Location . End  13204900 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39E4B.12a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001630 gly-5 Y39E4B.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39E4B.12a Y39E4B.12a 1881   III: 13188136-13188243

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12a.2 13188102 13204900 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon108491   142   III: 13188102-13188243 Caenorhabditis elegans
Exon108498   264   III: 13188299-13188562 Caenorhabditis elegans
Exon108504   119   III: 13190128-13190246 Caenorhabditis elegans
Exon108510   335   III: 13191292-13191626 Caenorhabditis elegans
Exon108516   332   III: 13194529-13194860 Caenorhabditis elegans
Exon108522   186   III: 13195993-13196178 Caenorhabditis elegans
Exon108528   129   III: 13197610-13197738 Caenorhabditis elegans
Exon108534   111   III: 13200771-13200881 Caenorhabditis elegans
Exon108540   129   III: 13203866-13203994 Caenorhabditis elegans
Exon108548   615   III: 13204286-13204900 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12a.2 13188102 13204900 1

1 Sequence

Length
2362

1 Sequence Ontology Term

Identifier Name Description
transcript