WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39E4B.12c.2 Sequence Name  Y39E4B.12c.2
Length (nt)  2358   Chromosome Location  III: 13188103-13204903
Chromosome . Primary Identifier  III Chromosome Location . Start  13188103
Chromosome Location . End  13204903 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39E4B.12c.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001630 gly-5 Y39E4B.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39E4B.12c Y39E4B.12c 1875   III: 13188136-13188243

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12c.2 13188103 13204903 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon108492   141   III: 13188103-13188243 Caenorhabditis elegans
Exon108502   264   III: 13188299-13188562 Caenorhabditis elegans
Exon108508   119   III: 13190128-13190246 Caenorhabditis elegans
Exon108514   335   III: 13191292-13191626 Caenorhabditis elegans
Exon108520   332   III: 13194529-13194860 Caenorhabditis elegans
Exon108526   186   III: 13195993-13196178 Caenorhabditis elegans
Exon108532   129   III: 13197610-13197738 Caenorhabditis elegans
Exon108536   105   III: 13200916-13201020 Caenorhabditis elegans
Exon108544   129   III: 13203866-13203994 Caenorhabditis elegans
Exon108550   618   III: 13204286-13204903 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12c.2 13188103 13204903 1

1 Sequence

Length
2358

1 Sequence Ontology Term

Identifier Name Description
transcript