WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39E4B.12b.2 Sequence Name  Y39E4B.12b.2
Length (nt)  2348   Chromosome Location  III: 13188108-13204901
Chromosome . Primary Identifier  III Chromosome Location . Start  13188108
Chromosome Location . End  13204901 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39E4B.12b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001630 gly-5 Y39E4B.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39E4B.12b Y39E4B.12b 1872   III: 13188136-13188243

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12b.2 13188108 13204901 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon108493   136   III: 13188108-13188243 Caenorhabditis elegans
Exon108500   264   III: 13188299-13188562 Caenorhabditis elegans
Exon108506   119   III: 13190128-13190246 Caenorhabditis elegans
Exon108512   335   III: 13191292-13191626 Caenorhabditis elegans
Exon108518   332   III: 13194529-13194860 Caenorhabditis elegans
Exon108524   186   III: 13195993-13196178 Caenorhabditis elegans
Exon108530   129   III: 13197610-13197738 Caenorhabditis elegans
Exon108538   102   III: 13202487-13202588 Caenorhabditis elegans
Exon108542   129   III: 13203866-13203994 Caenorhabditis elegans
Exon108549   616   III: 13204286-13204901 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39E4B.12b.2 13188108 13204901 1

1 Sequence

Length
2348

1 Sequence Ontology Term

Identifier Name Description
transcript