WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y43F4A.1a.1 Sequence Name  Y43F4A.1a.1
Length (nt)  2223   Chromosome Location  III: 13223072-13229465
Chromosome . Primary Identifier  III Chromosome Location . Start  13223072
Chromosome Location . End  13229465 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y43F4A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012796 Y43F4A.1 Y43F4A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43F4A.1a Y43F4A.1a 1992   III: 13223154-13223240

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y43F4A.1a.1 13223072 13229465 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon108561   169   III: 13223072-13223240 Caenorhabditis elegans
Exon108563   272   III: 13224094-13224365 Caenorhabditis elegans
Exon108566   118   III: 13224423-13224540 Caenorhabditis elegans
Exon108570   83   III: 13224731-13224813 Caenorhabditis elegans
Exon108571   258   III: 13224871-13225128 Caenorhabditis elegans
Exon108574   112   III: 13225282-13225393 Caenorhabditis elegans
Exon108575   150   III: 13225439-13225588 Caenorhabditis elegans
Exon108576   98   III: 13225636-13225733 Caenorhabditis elegans
Exon108577   90   III: 13226400-13226489 Caenorhabditis elegans
Exon108578   69   III: 13226532-13226600 Caenorhabditis elegans
Exon108579   364   III: 13227748-13228111 Caenorhabditis elegans
Exon108580   440   III: 13229026-13229465 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y43F4A.1a.1 13223072 13229465 1

1 Sequence

Length
2223

1 Sequence Ontology Term

Identifier Name Description
transcript