WormMine: Gene WBGene00194865

• WormBase Gene ID: WBGene00194865
• Gene Name: F53A2.10
• Sequence Name: F53A2.10
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in spermathecal-uterine junction; uv2; and uv3 based on single-cell RNA-seq studies. Is affected by several genes including ilc-17.1; cep-1; and tdp-1 based on RNA-seq studies.
• Biotype: SO:0002182
• Genetic Position: :±
• Length (nt): 922

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00194865

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F53A2.10	F53A2.10	278	III: 13357251-13358172

Other

0 CDSs

5 RNAi Result

• WBRNAi00048048
• WBRNAi00048049
• WBRNAi00015454
• WBRNAi00007029
• WBRNAi00032655

18 Allele

• gk963887
• gk963904
• gk963552
• WBVar00222337
• WBVar01410414
• WBVar01410413
• WBVar01794257
• gk812525
• gk764487
• WBVar00103404
• gk961984
• gk190295
• gk771930
• gk190293
• gk190294
• gk190292
• WBVar01984207
• WBVar02013256

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00194865
• Start: 13357251
• End: 13358172
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Genes that are significantly up regulated in tdp-1(ok803) poly(A) RNA-seq verses in N2.	DESeq v1.14, with cut-off p-value < 0.05 and FDR < 0.1.	WBPaper00046012:tdp-1(ok803)_upregulated
	Transcripts that showed significantly increased expression in adr-1(tm668) and adr-1(gv6) comparing to in N2 at L4 larva stage.	DESeq FDR <= 0.05	WBPaper00056617:adr-1_upregulated_L4_transcript
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly decreased expression in day 1 adult hermaphrodite comparing to in L4 larva daf-16(mu86);glp-1(e2141) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
	Transcripts that showed significantly decreased expression in day 3 adult hermaphrodite comparing to in L4 larva fem-3(q20) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
	ncRNAs with significantly decreased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_downregulated_normal
	Single-cell RNA-Seq cell group 11_2 expressed in epithelium.	scVI 0.6.0	WBPaper00065841:11_2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00194865
• Start: 13357251
• End: 13358172
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 922

1 Sequence Ontology Term