WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F45G2.2a.1 Sequence Name  F45G2.2a.1
Length (nt)  4047   Chromosome Location  III: 13409798-13423534
Chromosome . Primary Identifier  III Chromosome Location . Start  13409798
Chromosome Location . End  13423534 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F45G2.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009730 myo-6 F45G2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F45G2.2a F45G2.2a 3708   III: 13409943-13410014

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F45G2.2a.1 13409798 13423534 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon108955   217   III: 13409798-13410014 Caenorhabditis elegans
Exon108956   273   III: 13410702-13410974 Caenorhabditis elegans
Exon108957   157   III: 13411164-13411320 Caenorhabditis elegans
Exon108961   119   III: 13411788-13411906 Caenorhabditis elegans
Exon108962   74   III: 13411957-13412030 Caenorhabditis elegans
Exon108964   86   III: 13412075-13412160 Caenorhabditis elegans
Exon108966   93   III: 13412258-13412350 Caenorhabditis elegans
Exon108968   104   III: 13412397-13412500 Caenorhabditis elegans
Exon108970   139   III: 13412617-13412755 Caenorhabditis elegans
Exon108972   119   III: 13412803-13412921 Caenorhabditis elegans
Exon108974   153   III: 13412970-13413122 Caenorhabditis elegans
Exon108976   171   III: 13413176-13413346 Caenorhabditis elegans
Exon108979   458   III: 13413545-13414002 Caenorhabditis elegans
Exon108981   199   III: 13414182-13414380 Caenorhabditis elegans
Exon108983   78   III: 13414423-13414500 Caenorhabditis elegans
Exon108986   108   III: 13420185-13420292 Caenorhabditis elegans
Exon108989   80   III: 13420650-13420729 Caenorhabditis elegans
Exon108993   159   III: 13420964-13421122 Caenorhabditis elegans
Exon108997   325   III: 13421214-13421538 Caenorhabditis elegans
Exon109001   154   III: 13422021-13422174 Caenorhabditis elegans
Exon109005   94   III: 13422225-13422318 Caenorhabditis elegans
Exon109009   382   III: 13422378-13422759 Caenorhabditis elegans
Exon109016   305   III: 13423230-13423534 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F45G2.2a.1 13409798 13423534 1

1 Sequence

Length
4047

1 Sequence Ontology Term

Identifier Name Description
transcript