WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y76A2A.2a.1 Sequence Name  Y76A2A.2a.1
Length (nt)  3955   Chromosome Location  III: 13439730-13455307
Chromosome . Primary Identifier  III Chromosome Location . Start  13439730
Chromosome Location . End  13455307 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y76A2A.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000834 cua-1 Y76A2A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y76A2A.2a Y76A2A.2a 3717   III: 13439921-13440294

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y76A2A.2a.1 13439730 13455307 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109063   565   III: 13439730-13440294 Caenorhabditis elegans
Exon109065   465   III: 13440907-13441371 Caenorhabditis elegans
Exon109067   150   III: 13442113-13442262 Caenorhabditis elegans
Exon109069   208   III: 13442310-13442517 Caenorhabditis elegans
Exon109071   183   III: 13442918-13443100 Caenorhabditis elegans
Exon109073   186   III: 13443578-13443763 Caenorhabditis elegans
Exon109075   251   III: 13444116-13444366 Caenorhabditis elegans
Exon109077   484   III: 13445043-13445526 Caenorhabditis elegans
Exon109079   175   III: 13446358-13446532 Caenorhabditis elegans
Exon109081   239   III: 13449674-13449912 Caenorhabditis elegans
Exon109083   273   III: 13450474-13450746 Caenorhabditis elegans
Exon109085   125   III: 13451964-13452088 Caenorhabditis elegans
Exon109087   96   III: 13452139-13452234 Caenorhabditis elegans
Exon109090   156   III: 13452458-13452613 Caenorhabditis elegans
Exon109091   191   III: 13454441-13454631 Caenorhabditis elegans
Exon109092   208   III: 13455100-13455307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y76A2A.2a.1 13439730 13455307 -1

1 Sequence

Length
3955

1 Sequence Ontology Term

Identifier Name Description
transcript