WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27E9.9a.1 Sequence Name  T27E9.9a.1
Length (nt)  1488   Chromosome Location  III: 13480665-13484124
Chromosome . Primary Identifier  III Chromosome Location . Start  13480665
Chromosome Location . End  13484124 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27E9.9a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012099 acc-4 T27E9.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27E9.9a T27E9.9a 1227   III: 13481096-13481120

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27E9.9a.1 13480665 13484124 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109171   116   III: 13480665-13480780 Caenorhabditis elegans
Exon109174   170   III: 13480951-13481120 Caenorhabditis elegans
Exon109175   68   III: 13481567-13481634 Caenorhabditis elegans
Exon109178   61   III: 13481930-13481990 Caenorhabditis elegans
Exon109181   159   III: 13482107-13482265 Caenorhabditis elegans
Exon109184   191   III: 13482310-13482500 Caenorhabditis elegans
Exon109187   175   III: 13482638-13482812 Caenorhabditis elegans
Exon109190   63   III: 13482857-13482919 Caenorhabditis elegans
Exon109193   126   III: 13482969-13483094 Caenorhabditis elegans
Exon109196   190   III: 13483464-13483653 Caenorhabditis elegans
Exon109199   83   III: 13483702-13483784 Caenorhabditis elegans
Exon109202   86   III: 13484039-13484124 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27E9.9a.1 13480665 13484124 -1

1 Sequence

Length
1488

1 Sequence Ontology Term

Identifier Name Description
transcript