WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W06F12.1a.1 Sequence Name  W06F12.1a.1
Length (nt)  2846   Chromosome Location  III: 13714045-13724404
Chromosome . Primary Identifier  III Chromosome Location . Start  13714045
Chromosome Location . End  13724404 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W06F12.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003048 lit-1 W06F12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W06F12.1a W06F12.1a 1905   III: 13714045-13714184

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W06F12.1a.1 13714045 13724404 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109606   140   III: 13714045-13714184 Caenorhabditis elegans
Exon109607   119   III: 13714558-13714676 Caenorhabditis elegans
Exon109611   174   III: 13715498-13715671 Caenorhabditis elegans
Exon109615   102   III: 13715750-13715851 Caenorhabditis elegans
Exon109620   113   III: 13718354-13718466 Caenorhabditis elegans
Exon109627   116   III: 13719826-13719941 Caenorhabditis elegans
Exon109634   186   III: 13720097-13720282 Caenorhabditis elegans
Exon109642   107   III: 13721690-13721796 Caenorhabditis elegans
Exon109649   635   III: 13722263-13722897 Caenorhabditis elegans
Exon109662   1154   III: 13723251-13724404 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W06F12.1a.1 13714045 13724404 1

1 Sequence

Length
2846

1 Sequence Ontology Term

Identifier Name Description
transcript