WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K08E3.7a.1 Sequence Name  K08E3.7a.1
Length (nt)  1266   Chromosome Location  III: 13771519-13773343
Chromosome . Primary Identifier  III Chromosome Location . Start  13771519
Chromosome Location . End  13773343 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K08E3.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003967 pdr-1 K08E3.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K08E3.7a K08E3.7a 1161   III: 13771531-13771599

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K08E3.7a.1 13771519 13773343 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109822   81   III: 13771519-13771599 Caenorhabditis elegans
Exon109823   146   III: 13771645-13771790 Caenorhabditis elegans
Exon109827   433   III: 13771881-13772313 Caenorhabditis elegans
Exon109831   91   III: 13772360-13772450 Caenorhabditis elegans
Exon109833   205   III: 13772730-13772934 Caenorhabditis elegans
Exon109837   75   III: 13772988-13773062 Caenorhabditis elegans
Exon109842   235   III: 13773109-13773343 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K08E3.7a.1 13771519 13773343 1

1 Sequence

Length
1266

1 Sequence Ontology Term

Identifier Name Description
transcript