WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K08E3.8.1 Sequence Name  K08E3.8.1
Length (nt)  1570   Chromosome Location  III: 13773456-13778889
Chromosome . Primary Identifier  III Chromosome Location . Start  13773456
Chromosome Location . End  13778889 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K08E3.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007025 mdt-29 K08E3.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K08E3.8 K08E3.8 1326   III: 13773470-13773517

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K08E3.8.1 13773456 13778889 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109846   62   III: 13773456-13773517 Caenorhabditis elegans
Exon109847   108   III: 13773956-13774063 Caenorhabditis elegans
Exon109849   210   III: 13774559-13774768 Caenorhabditis elegans
Exon109851   231   III: 13775117-13775347 Caenorhabditis elegans
Exon109853   348   III: 13777379-13777726 Caenorhabditis elegans
Exon109856   261   III: 13778170-13778430 Caenorhabditis elegans
Exon109858   350   III: 13778540-13778889 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K08E3.8.1 13773456 13778889 1

1 Sequence

Length
1570

1 Sequence Ontology Term

Identifier Name Description
transcript