WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38C1AB.4b.1 Sequence Name  Y38C1AB.4b.1
Length (nt)  4663   Chromosome Location  IV: 641-15416
Chromosome . Primary Identifier  IV Chromosome Location . Start  641
Chromosome Location . End  15416 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38C1AB.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021406 frm-5.2 Y38C1AB.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38C1AB.4b Y38C1AB.4b 4119   IV: 695-1065

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38C1AB.4b.1 641 15416 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109869   425   IV: 641-1065 Caenorhabditis elegans
Exon109873   223   IV: 1279-1501 Caenorhabditis elegans
Exon109877   603   IV: 1625-2227 Caenorhabditis elegans
Exon109881   76   IV: 2698-2773 Caenorhabditis elegans
Exon109885   137   IV: 4909-5045 Caenorhabditis elegans
Exon109889   75   IV: 5146-5220 Caenorhabditis elegans
Exon109893   323   IV: 5462-5784 Caenorhabditis elegans
Exon109897   445   IV: 6259-6703 Caenorhabditis elegans
Exon109903   143   IV: 7312-7454 Caenorhabditis elegans
Exon109907   152   IV: 7705-7856 Caenorhabditis elegans
Exon109911   180   IV: 7951-8130 Caenorhabditis elegans
Exon109915   197   IV: 8352-8548 Caenorhabditis elegans
Exon109924   154   IV: 11268-11421 Caenorhabditis elegans
Exon109928   329   IV: 12469-12797 Caenorhabditis elegans
Exon109932   159   IV: 13185-13343 Caenorhabditis elegans
Exon109936   331   IV: 13704-14034 Caenorhabditis elegans
Exon109942   711   IV: 14706-15416 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38C1AB.4b.1 641 15416 1

1 Sequence

Length
4663

1 Sequence Ontology Term

Identifier Name Description
transcript